PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019678
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 255aa    MW: 28012.8 Da    PI: 9.654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019678genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-1267113354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riNs +++Lr l+P +      K +Ka+ L ++v+ +k+L
  Cla019678  67 KNHSEAERRRRERINSHLSTLRGLVPCP-----VKRDKATLLAEVVRQVKEL 113
                58*************************9.....7********9999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-967113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-1268121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1268120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1070119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.3E-5148197No hitNo description
CDDcd048732.08E-9151222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAYSYDASTS IDPFLHSLEN FNRGFVRSGS ILSQSLVLNG EKGELVKAPI QPSKKRVSEE  60
KALAALKNHS EAERRRRERI NSHLSTLRGL VPCPVKRDKA TLLAEVVRQV KELKKKAAEA  120
SNGIFVPMDT DEVNVEPCGV GANGDMSFKA TLCCEYRPEL LSDLKQALDS LHLKLVKAEI  180
STLGNRVKNI FFFTSAIADN GDHSEASQHL ASSVRQAISF VLDKASSPEY SPRTTLPMKR  240
RRLSSFDTSS SSSGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
2238242KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149053.11e-164PREDICTED: putative transcription factor bHLH107
TrEMBLA0A0A0LX881e-163A0A0A0LX88_CUCSA; Uncharacterized protein
STRINGXP_004163475.11e-163(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-41bHLH family protein