PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019599

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

M-type_MADS

Protein Properties

Length: 169aa MW: 19055.9 Da PI: 4.8058

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019599	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.9	7.3e-20	4	50	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ rqvtfskRrng++KKA+ L +LC+ e+a+++fs+ gk + + Cla019599 4 VKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSF 50 677889************************************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.175	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.59E-24	1	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-21	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-23	5	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-11	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-11	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKMVKDRGSR QVTFSKRRNG LFKKANDLAT LCGLEIAIVV FSPGGKAFSF GNPNVEDVVD 60 RYLNRESEAI QIPAVREGGI LGKENEELID LVKQLQMEKK KGEMMEKEMK SRGELMKIED 120 LDLDELLKLK ESLERLRKNV KIEESELEAS SSLLLLANEP VVEADESNS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-179	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-179	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444113.1	9e-92	PREDICTED: agamous-like MADS-box protein AGL29 isoform X1
TrEMBL	A0A1S3B9N7	2e-90	A0A1S3B9N7_CUCME; agamous-like MADS-box protein AGL29 isoform X1
STRING	XP_008444113.1	3e-91	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2424	29	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-27	AGAMOUS-like 62