PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019548
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 902aa    MW: 99933.5 Da    PI: 6.4023
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019548genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23127228199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++ +l++
  Cla019548 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEKNQLLL 223
                99*****************************9445444.38************************************************..8899999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  Cla019548 224 GIRRA 228
                **997 PP
2Auxin_resp1163.2e-38253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+haa+t s F++++nPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
   Cla019548 253 ASHAAATISRFTIFFNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                 789********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-21126227No hitNo description
PfamPF023621.1E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449127229IPR003340B3 DNA binding domain
SMARTSM010191.5E-23127229IPR003340B3 DNA binding domain
PfamPF065071.1E-32253336IPR010525Auxin response factor
SuperFamilySSF542772.49E-7759844No hitNo description
PfamPF023094.7E-7760858IPR033389AUX/IAA domain
PROSITE profilePS5174522.663769853IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MRLSAGGFSP QAQEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAQIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSAQELKEA YLPAELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAASHAAATI SRFTIFFNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSFGIKDSD LGMNSPFMWL RGDNSDRGIQ CLNFQGTGVS  420
PWMQPRLDPS MMGMQSDMYQ AMATAALQEM RAIDYSKIAP ASVLQFQQPQ GLPCQSSTLM  480
QPQMLHQSQP QQAFLQSVQE NQQHSQSQSQ AQTQSHHLQP QLQPQQLFNN QQQQHQQQPR  540
QAQPLDHQQI PCTIPAISQF ASCSQSQSPS LQTVPSLCQQ PGFSDSNGNP VTSPTVSPLH  600
SLAGSFVQDD SAQLLNLQRA HSVIPSAGWP SKRAAIDPLC TGAAQYFLPQ VEILGTPQSS  660
ISQNTVALPP FPGRECPIDD RDEGSDPQNH VLFGVNIESS SLLMQNGMSN LRGVGNDSVS  720
TTLPFSSNYM STAGTNFSVN PTMTSSNCID ESGFLQSHEN VGQVNPPNGT FVKVHKSGTY  780
SRSLDITKFN SYPELRSELA RMFGLEGELE DPLRSGWQLV FVDRENDVLL LGDGPWPEFV  840
NSVWCIKILS PEEVQDMGKR GLELLNSVPI QRLSNSTCDD YGSRQDSRNL ISGITSVGAL  900
DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1126740.0AB112674.1 Cucumis sativus CsARF4 mRNA for auxin response factor 4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150775.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0A0LVD90.0A0A0A0LVD9_CUCSA; Auxin response factor
STRINGXP_004150775.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]