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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 38048.7 Da PI: 5.916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.1e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d++++ G g+W+t ++ g+ R++k+c++rw +yl Cla019451 14 KGPWTPEEDQKLIDYIQKNGHGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.9e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia +++ gRt++++k++w+++ Cla019451 67 RGRFSFEEEETIIQLHSVLGNK-WSAIATRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.36 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.444 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.8E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.12E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRTPCCDKN GLKKGPWTPE EDQKLIDYIQ KNGHGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIATRLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILR STLYNSSQMN LSSLLGVQPL VNPELLKLAA SLMSSERKIP 180 SFSPPNSTHS TIQFSHPQLQ MQVPMQEIVQ FPSQAVEPIT SELNDEWQNG SILPSNLSQD 240 CNCDLAVGFE YCGFDQQQEA GAVMDNSYET ATFSSHKGNG NGNNFSLGSV LSSPCSSSPT 300 QMNSNSTYFT SPTEDERESY CSQILNFEIA DIFDEPFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-121 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-121 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008441942.2 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q9LDR8 | 1e-108 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1S3B5A9 | 0.0 | A0A1S3B5A9_CUCME; protein ODORANT1-like | ||||
STRING | XP_008441942.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF850 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-95 | MYB-like 102 |
Publications ? help Back to Top | |||
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