PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019223
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 362aa    MW: 41240.8 Da    PI: 6.8653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019223genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
        Cla019223 14 KGLWSPEEDEKLFNYITNFGVGCWSSVPKLAGLERCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.39.6e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
        Cla019223  67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24664IPR009057Homeodomain-like
PROSITE profilePS5129424.539965IPR017930Myb domain
SuperFamilySSF466891.46E-2811108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002497.7E-141461IPR001005SANT/Myb domain
CDDcd001678.92E-101761No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007172.4E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.64566116IPR017930Myb domain
PfamPF002499.1E-1467111IPR001005SANT/Myb domain
CDDcd001671.37E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRNSCCLKP KLRKGLWSPE EDEKLFNYIT NFGVGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
LDPTTHKPLE ENMEAMKDEK KNSYNNEKPR ILEVAHHHHH HHLHENISNI TEHSNHYYKQ  180
TEDSSQHFVN KIEFDSLSSY LGGEYNNNSQ FAAAQYQSNN FFFSNPSIGI GMPSYSSSEH  240
GNMSRTDFSE NSASGLTSFF MNEVKESSSN SSVVSNYSGY HMNNPGESNN GGGFSWESEN  300
KLETLLQFQT NQMKNLEFKA GSSVEETKII QTQINSATFG SYPLMSMSEN ERSGSCGIFH  360
HI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-28711620128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138267.10.0PREDICTED: transcription factor MYB32-like
TrEMBLA0A1S3CLT80.0A0A1S3CLT8_CUCME; transcription factor MYB32-like isoform X1
STRINGXP_004155089.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-80myb domain protein 86