PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019158
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family E2F/DP
Protein Properties Length: 335aa    MW: 37891.9 Da    PI: 9.6211
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019158genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.33e-191974161
    E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliek 61
               rk+ksL+ll+++fl+l+ + + + ++l+++a++L    v  +rRRiYDi+NVLe+++li+ 
  Cla019158 19 RKQKSLGLLCSNFLRLYDRDDVQSISLDNAASRL---GV--ERRRIYDIVNVLESVGLIDD 74
               79****************9999************...**..******************85 PP
2E2F_TDP73.71.9e-23107187171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                rkeksL lltq+f+kl+ +s++ +++l+e+ak L+ +      ++ k RR+YDi+NVL a++liek     ++k+++rw g
  Cla019158 107 RKEKSLALLTQNFVKLFVCSNAHVISLDEAAKLLLGDaqsvsIMRSKIRRLYDIANVLAAIRLIEKtqtvdTRKPAFRWLG 187
                79***************************************99999************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-211573IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.5E-131974IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-1719103IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-162074IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-22104188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-29107187IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-18108187IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.13E-12109188IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAANLHLPVP DSSSNAYCRK QKSLGLLCSN FLRLYDRDDV QSISLDNAAS RLGVERRRIY  60
DIVNVLESVG LIDDEDETCS DLTSVSHEYS MLSKSSASVR CVASENRKEK SLALLTQNFV  120
KLFVCSNAHV ISLDEAAKLL LGDAQSVSIM RSKIRRLYDI ANVLAAIRLI EKTQTVDTRK  180
PAFRWLGLRG RVENCRAGKP MESNKRSFGT DITNINSKRN RLANSFDLNK SPNSQKQNHV  240
QLEGCRVEVD GGELEHDPNS KSFKFGPFSP SARLEVRALK NEAKRSRNNW VSLAATYHPQ  300
YQNQALRELF SHYKEAWKLW YVQTVNRPSI QIPEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-23191794228Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022921523.10.0E2F transcription factor-like E2FE
TrEMBLA0A1S3BVI31e-175A0A1S3BVI3_CUCME; E2F transcription factor-like E2FE isoform X2
STRINGXP_004166228.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.19e-66DP-E2F-like protein 3