PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019153

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 305aa MW: 32989.6 Da PI: 8.4853

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019153	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.8e-14	86	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +q G+g+W+ I+r + k+Rt+ q+ s+ qky Cla019153 86 PWTEEEHKLFLIGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKY 130 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.653	79	135	IPR017930	Myb domain
SuperFamily	SSF46689	2.54E-17	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-16	82	133	IPR006447	Myb domain, plants
SMART	SM00717	4.7E-9	83	133	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	85	130	IPR009057	Homeodomain-like
CDD	cd00167	1.56E-8	86	131	No hit	No description
Pfam	PF00249	8.1E-11	86	130	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MRSTTAAVNE SAAAETGGGS PGEIMLFGVR VYEQPHDAAD VIANNNKNDL VSVNNKDDVA 60 AGYASADDAV PNARGNRERE RKRGVPWTEE EHKLFLIGLQ QVGKGDWRGI SRNFVKTRTP 120 TQVASHAQKY FLRRSNLNRR RRRSSLFDIT TDTVTAAPMV EEPVQRQEIP SQSHSFTPST 180 LPEISKNNVI PIIQTLPLSF GPTPLATPTK NLMEKCGPRE VNTENDGSLK LGLADSIFSS 240 NQIPTSTGLN TNSTSAMESL SSSSSSSALS LRLSLTSDQR DASSRHSTFQ SIPSFNSGDA 300 IISAA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	1e-103	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	1e-103	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022135144.1	1e-176	transcription factor MYB1R1-like
Swissprot	Q2V9B0	8e-57	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1S3BWN9	1e-174	A0A1S3BWN9_CUCME; transcription factor MYB1R1
STRING	XP_008453152.1	1e-174	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-47	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]