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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB | ||||||||
Protein Properties | Length: 164aa MW: 19104 Da PI: 10.543 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl Cla019115 14 KGPWTPEEDIILVSYIHQHGPGNWRSVPNNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T Ed ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Cla019115 67 RGHFTDHEDNMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.905 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.058 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.0E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-10 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGRPPCCQTI GIKKGPWTPE EDIILVSYIH QHGPGNWRSV PNNTGLLRCS KSCRLRWTNY 60 LRPGIKRGHF TDHEDNMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKAGF 120 DQIQNGFSKG QWERRLQTDI QTAKQALKEV FPLQQQTKIQ FIKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-59 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-59 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022972917.1 | 5e-98 | myb-related protein 306-like | ||||
Swissprot | P81392 | 4e-86 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A0A0LUH3 | 2e-93 | A0A0A0LUH3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138300.1 | 3e-94 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 5e-88 | myb domain protein 96 |
Publications ? help Back to Top | |||
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