PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019112

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Nin-like

Protein Properties

Length: 319aa MW: 36588.2 Da PI: 4.726

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019112	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.6	3.7e-26	148	198	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s + +s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Cla019112 148 SKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 198 578999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	134	219	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-21	151	198	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDATWGPKCE VMVFEDSFPL SCQLSPLPFR SSYNNYSGLD WNCNFGLQDN IFEVVPLLES 60 FPNNDSFLES KDIVPINTFI SEDGVGIWSE MENGIFGFVE EEPVLLLEGE DGGGNEENRE 120 VMKKGKRKYL RSENSKNNGS YSTSSSSSKM LSRKAISEYF YMPITQAAKE LNVGLTLLKK 180 RCRELGIRRW PHRKLMSLQT LIKNVKEIEK GEGEGNGENK LKNVLEILEN EKKLMEERPD 240 LQLEDNTKRL RQACFKANYK KRKLSGIIFN NNNNIINEDN SQCFSSSTTI HDRDEEDDEE 300 MKYLLSDCSF SSTNCTLFM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	3e-71	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	3e-71	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453676.1	1e-122	PREDICTED: protein RKD1-like
TrEMBL	A0A1S3BWU6	1e-120	A0A1S3BWU6_CUCME; protein RKD1-like
STRING	XP_008453676.1	1e-121	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-38	RWP-RK domain-containing protein