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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Nin-like | ||||||||
Protein Properties | Length: 319aa MW: 36588.2 Da PI: 4.726 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.6 | 3.7e-26 | 148 | 198 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s + +s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Cla019112 148 SKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 198 578999******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.575 | 134 | 219 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.2E-21 | 151 | 198 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MDATWGPKCE VMVFEDSFPL SCQLSPLPFR SSYNNYSGLD WNCNFGLQDN IFEVVPLLES 60 FPNNDSFLES KDIVPINTFI SEDGVGIWSE MENGIFGFVE EEPVLLLEGE DGGGNEENRE 120 VMKKGKRKYL RSENSKNNGS YSTSSSSSKM LSRKAISEYF YMPITQAAKE LNVGLTLLKK 180 RCRELGIRRW PHRKLMSLQT LIKNVKEIEK GEGEGNGENK LKNVLEILEN EKKLMEERPD 240 LQLEDNTKRL RQACFKANYK KRKLSGIIFN NNNNIINEDN SQCFSSSTTI HDRDEEDDEE 300 MKYLLSDCSF SSTNCTLFM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 3e-71 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 3e-71 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453676.1 | 1e-122 | PREDICTED: protein RKD1-like | ||||
TrEMBL | A0A1S3BWU6 | 1e-120 | A0A1S3BWU6_CUCME; protein RKD1-like | ||||
STRING | XP_008453676.1 | 1e-121 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 3e-38 | RWP-RK domain-containing protein |