PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019030
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 573aa    MW: 63199.4 Da    PI: 8.221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019030genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.00031258275219
                HHHHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsa 19 
                r +h++ E+rRR++iN++
  Cla019030 258 RSKHSATEQRRRSKINDR 275
                889*************96 PP
2HLH22.32.3e-072883211855
                HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                s f+ Lr l+P++    ++K +Ka+ L ++veYI+ Lq
  Cla019030 288 SLFQMLRGLIPHS----DQKRDKASFLLEVVEYIQFLQ 321
                5799********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-21253342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-13255340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.122256320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-11258325No hitNo description
SMARTSM003532.3E-4262326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-5289321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MELPQPRPFG AEGSKSTHDF LSLYTHSSPQ LDPRSSPQGS YLKTHDFLQP QERIRKASTK  60
EETDVERPPP PAPPPSVEHL LPGGIGTYSI SHLSYFDQRV LPKPEGSVYT GARSSSSVER  120
NDENSNGSSF AVAGNGFTLW EECAVKKGKT GKENVVGDRP HEPRASTSQW TASMERPSQS  180
SSNNHHNTFS CLSSSQPTGT KNPSFMEMLK SAKSTSQDEE LDDDGDFVIK KETSTANKGG  240
LRIKVDGNSS DQKANTPRSK HSATEQRRRS KINDRQVFLL LFNSEFVSLF QMLRGLIPHS  300
DQKRDKASFL LEVVEYIQFL QEKVQKYEGS YQEWNHEMAK LVPLRNNQRS ADVYNDQSRG  360
INSGSVPALV LAAKFIEKNS PLSPIVPGSS HNAVDSDTSS ASTLKAVDYH SGRINNAVQF  420
PMSMPPKLYA PTRDGSVVPQ PPKQLSSETD HPSLRPEIRS CEARCYNNDV AVASEMQKEQ  480
DLTIEGGTIN ISSVYSQGLL NTLTHALQSS GVDLSQARIS VQIELGKRAT RRAISPTPMV  540
KDVNDMGMTM QARVSATEDC ERATKKLKTT VKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-166LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-166LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453321.10.0PREDICTED: transcription factor BIM1
TrEMBLA0A1S3BX430.0A0A1S3BX43_CUCME; transcription factor BIM1
STRINGXP_008453321.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-110bHLH family protein