PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018968

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 260aa MW: 29092.8 Da PI: 7.7615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018968	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.5e-08	153	200	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Cla018968 153 SHSLAERVRRGKINERLRCLKDIVPGC----YKTMGMAVMLDEIINYVQSLQ 200 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-16	147	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.90E-10	147	204	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-15	149	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.123	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-5	153	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MADHDFTSFP LEDPNLELMA SHFSPSIPSF THFLPFSTTT TTTDMFFPSH QTPPNFPETT 60 NFTTSPVFPS HSVLPPAPSS VSTHHFHDLN KRKSMDVSES TSGISTPQVS ETGFKTKYSS 120 GKGKRLKGVE KEEEKSTREV VHVRARRGQA TDSHSLAERV RRGKINERLR CLKDIVPGCY 180 KTMGMAVMLD EIINYVQSLQ NQVEFLSMKL AAASSFYDFN SEADTISKLQ KAKAHEAKEL 240 ERLMREGYGG IACFHSNLPL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453408.1	1e-161	PREDICTED: transcription factor BEE 3-like
Swissprot	Q8GWK7	1e-66	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A1S3BW65	1e-159	A0A1S3BW65_CUCME; transcription factor BEE 3-like
STRING	XP_008453408.1	1e-160	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	1e-63	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]