PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018722

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 422aa MW: 44500.8 Da PI: 7.0181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018722	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	222	267	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cla018722 222 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 267 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.73E-13	215	271	No hit	No description
SuperFamily	SSF47459	4.97E-17	215	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	219	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-9	222	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MQPCSREMQT LNSLLNHAQI SLQDLHADPH HHHNHHLNPP PPQIPPSHLH HFDPASAASH 60 DDFLEQMLNT IPSCSWPDLN PSNPKSPWDL NPINKPSRDI SDDPHQNHIT ATSPAAKAAV 120 MLQQQLLLSR GMSGSTGNGV ADHGLPPMPL SLGNADLDRS QNDVVDGSCF RPPNSGGSLQ 180 SHSFGAPANV MNQTPGGGSA GVSQSQPKQK VRARRGQATD PHSIAERLRR ERIAERMKAL 240 QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD VSSEGGGECM 300 QGSGAQAGRN SNNGSGGNQT ASSNDSMTVT EQQVAKLMEK DMGSAMQYLQ GKGLCLMPIS 360 LATAISTSTC HSRNPLINGG SQLPVIGSNG EGPSSPSMSV LTVQSTSMGN GSVKDAASVS 420 KP

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MQPCSREMQT LNSLLNHAQI SLQDLHADPH HHHNHHLNPP PPQIPPSHLH HFDPASAASH  60
DDFLEQMLNT IPSCSWPDLN PSNPKSPWDL NPINKPSRDI SDDPHQNHIT ATSPAAKAAV  120
MLQQQLLLSR GMSGSTGNGV ADHGLPPMPL SLGNADLDRS QNDVVDGSCF RPPNSGGSLQ  180
SHSFGAPANV MNQTPGGGSA GVSQSQPKQK VRARRGQATD PHSIAERLRR ERIAERMKAL  240
QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD VSSEGGGECM  300
QGSGAQAGRN SNNGSGGNQT ASSNDSMTVT EQQVAKLMEK DMGSAMQYLQ GKGLCLMPIS  360
LATAISTSTC HSRNPLINGG SQLPVIGSNG EGPSSPSMSV LTVQSTSMGN GSVKDAASVS  420
KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	231	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681808	1e-147	LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBank	LN713256	1e-147	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022921826.1	0.0	transcription factor bHLH82-like
Swissprot	Q9ZUG9	6e-87	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S3B943	0.0	A0A1S3B943_CUCME; transcription factor bHLH82
STRING	XP_008443870.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-66	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]