PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018661
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 451aa    MW: 49913 Da    PI: 8.6783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018661genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-066183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C++C++ F r  nL+ H r+H
  Cla018661 61 YVCEICNQGFQRDQNLQMHRRRH 83
               9*********************9 PP
2zf-C2H2163.3e-05138160123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k +  +s++k H++t+
  Cla018661 138 WVCEKCSKGYAVQSDYKAHLKTC 160
                58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.71E-55884No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355190102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-4129159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560138165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MIGNTATSAS PVLPSSEPYS CLENGNNNNN SKRKRRPAGT PDPDAEVVSL SPKTLLESDR  60
YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KRETPVVRKR VFVCPEPTCL HHDPCHALGD  120
LVGIKKHFRR KHSNHKQWVC EKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI  180
EHQDACNMGH LRQESQTIQP AACLSRTASS PSPSSDTNFS SAAPNNWPAL VAPPTLKPVD  240
AIFLVPTDDS NNNTNNDHNL DLKLSTASNG VEGRSNNKGS STKLQLSIGS FDFGDKKKML  300
KLDDEKKGGF RGGAGDVREE AREELRVAMA EKAYAEEARQ QAKRQIEMAE EEFGNAKRMR  360
QQAQAELDKA TALKQAAIKQ INSTILEITC QACQKQFQAK AKPTTTTTTT TSAATDHDNY  420
SVAFSYVSSV ITTEGEVEKD QSTIIPKPPN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-18136187556Zinc finger protein JACKDAW
5b3h_F5e-18136187556Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-171LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-171LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452902.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-148IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A1S3BW520.0A0A1S3BW52_CUCME; protein SHOOT GRAVITROPISM 5-like
STRINGXP_008452902.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-119indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]