PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018581
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 394aa    MW: 43440 Da    PI: 9.2452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018581genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.1e-16202247555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Cla018581 202 HNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 247
                9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-19195258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-14202247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-19202256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-16202251No hitNo description
SMARTSM003536.4E-18203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCVLFREKQG VTELTWQNGQ LALHGIDGLQ PTVPPKPTWN RGNDTLESVV NQAKLHTQGP  60
NLIQQGEPLV HTGRTLTSSG ANGKWVERGN QEPSARKRTR STSDYGGKNV STSDNNNNSN  120
TMQVDHGDHS VCGSASAAFC RDNETTLMTW ASFDSPRSLK TKSIDEDSAC HVESENQEEE  180
QDTKRVANRS HSARRSRAAA IHNQSERRRR DRINEKMKAL QKLVPNASKT DKASMLDEVI  240
EYLKQLQAQV QFMSVRSMQQ MIMPIGMQQQ LQMSLLARMG MGVGLGMGMG MLDMSGMARS  300
APQALPPLIH PTSVPTTPPA FVPPHFLLPP AIPRQDPTQT KPATNGSVDP FCAFLAQTMN  360
MDIYNKMAAL YRQQVNQTTN AMSSPTQSNN VQGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447613.10.0PREDICTED: transcription factor PIF7-like isoform X2
TrEMBLA0A1S3BHA00.0A0A1S3BHA0_CUCME; transcription factor PIF7-like isoform X2
STRINGXP_008447543.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.11e-35phytochrome-interacting factor7