PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018501
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 291aa    MW: 32803.4 Da    PI: 6.598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018501genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-162875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++ +  +G g+W++ a++ g++Rt+k+c++rw++yl
        Cla018501 28 RGPWTLEEDNLLIHSISTHGEGRWNLLASRSGLRRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding51.13.1e-1681124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
        Cla018501  81 RGNLSAQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 124
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5112375IPR017930Myb domain
SuperFamilySSF466892.58E-2926122IPR009057Homeodomain-like
SMARTSM007172.1E-152777IPR001005SANT/Myb domain
PfamPF002492.1E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-212982IPR009057Homeodomain-like
CDDcd001673.05E-113075No hitNo description
PROSITE profilePS5129424.2576130IPR017930Myb domain
SMARTSM007171.8E-1480128IPR001005SANT/Myb domain
PfamPF002499.9E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2283129IPR009057Homeodomain-like
CDDcd001671.00E-1085124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSNSSPKSFS SCSSEIEDDN NNGNELRRGP WTLEEDNLLI HSISTHGEGR WNLLASRSGL  60
RRTGKSCRLR WLNYLKPDVK RGNLSAQEQL LILDLHSKWG NRWSKIAQHL PGRTDNEIKN  120
YWRTRVQKQA RHLNIDTNSE AFQQIIRSYW MPRLIQKINQ SPPSELPITS PPEMLSQSSF  180
AFEAPTTAPP PPAMTPLPIG GELMGSSCNS SSSSSSQITQ ISGYQNYENF GSFLKDYCHD  240
GHGGGEMMNW ATTAVTGDSS YPVAHCHVAE NNWMDSDFTG YMSNVDELWQ F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24251304108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137477.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9C9G76e-77MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1S3C8F61e-161A0A1S3C8F6_CUCME; transcription factor MYB108-like
STRINGXP_004165379.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.16e-78myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]