PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018325
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 55aa    MW: 5890.67 Da    PI: 8.8056
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018325genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-091446132
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                     rg+W++eEd +l++ ++ +G g +W + +++ g
        Cla018325 14 RGPWSPEEDAKLKQHIHNHGIGgNWISLPQKAG 46
                     89******************999**99999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-11544IPR009057Homeodomain-like
SuperFamilySSF466893.36E-7846IPR009057Homeodomain-like
PROSITE profilePS500906.922955IPR017877Myb-like domain
PfamPF002491.3E-61446IPR001005SANT/Myb domain
CDDcd001672.28E-41638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKQHIH NHGIGGNWIS LPQKAGLSDA GKVAD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487066.11e-26transcription factor RAX2-like
RefseqXP_016187492.12e-26transcription factor RAX2
RefseqXP_025641703.12e-26transcription factor RAX2
SwissprotQ9M2Y94e-24RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A1S2XF853e-25A0A1S2XF85_CICAR; transcription factor RAX2-like
TrEMBLA0A445AA604e-25A0A445AA60_ARAHY; Uncharacterized protein
STRINGXP_004487066.15e-26(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-26myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]