PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018293
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 698aa    MW: 76727.5 Da    PI: 6.7817
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018293genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23120221199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l+
  Cla018293 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLC 215
                89****************************996555555..89***********************************************..4488999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  Cla018293 216 VGIRRA 221
                ***997 PP
2Auxin_resp112.15.5e-37287370183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++Fe+v++Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+ +v+ +dp+rWp+S+Wr+L+
   Cla018293 287 AATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTINSVQVSDPLRWPESPWRLLQ 370
                 68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37113224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-29114226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-21119220No hitNo description
PROSITE profilePS5086313.112120222IPR003340B3 DNA binding domain
PfamPF023628.8E-22120221IPR003340B3 DNA binding domain
SMARTSM010191.7E-21120222IPR003340B3 DNA binding domain
PfamPF065072.1E-31287370IPR010525Auxin response factor
PROSITE profilePS5174521.026612692IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MITFMDSKEK LKEVEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH SCAPVDFRNC  60
PKVPSYTLCR VSAIKFLADP DTDEVFAKLR LIPINGNELD FEDDGIGRLN GSEQDKPTSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGPE SSCGWNPAGG  240
NCAVPYGAFS SFLREDDNRL TRSANGMNGN GSLMGKGKVK PESVIEAATL AANGQPFEIV  300
FYPRASTPEF CVKAALVKAA LQIRWCSGMR FKMAFETEDS SRISWFMGTI NSVQVSDPLR  360
WPESPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMSPIH LAPFSPPRKK LRYPQHPDFP  420
LDNQPPVPSF SSYLHGTGSP FGCPPDNNPA GMQGARHAHF GLSLSDFHLS KLQSGLFSIG  480
YRSLDPAAGS TRLSGNAMTE KPSMSENVSC LLTMAHSTQA SKKFDGVKTP QLILFGRPIL  540
TELQMSQSFS GDTVSPVNTG NSSSDGNGDK TANFSDGSGS ALHQQGLPEG SACENFQWYK  600
DNRQEIEPIL DTGHCKVFME SEDVGRTLDL SSLGSYEELY RKLGNMFGID NSETLNHVLY  660
RDVSGAVKHV GDEQFSDFIK TARRLTILTD SGSNNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-831839151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8433430.0KC843343.1 Cucumis sativus auxin response factor 10b (ARF10b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449245.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3BM800.0A0A1S3BM80_CUCME; Auxin response factor
STRINGXP_008449245.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]