PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla018268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 441aa MW: 48980.6 Da PI: 7.9634 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.5e-16 | 114 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cla018268 114 SEYRGVTYYRRTGRWESHIWD------SgKQVYLGGFDTAHSAARAYDRAAIKFRG 163 569******************......44************************997 PP | |||||||
2 | AP2 | 44.2 | 4.7e-14 | 217 | 267 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k++g Cla018268 217 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKYNG 267 89********.7******5553..2.26**********99************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.75E-16 | 114 | 173 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.00E-23 | 114 | 173 | No hit | No description |
SMART | SM00380 | 7.8E-30 | 115 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-17 | 115 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-10 | 115 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.662 | 115 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.44E-25 | 217 | 277 | No hit | No description |
SuperFamily | SSF54171 | 4.97E-17 | 217 | 276 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-9 | 217 | 267 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-30 | 218 | 281 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-16 | 218 | 276 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.12 | 218 | 275 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 219 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 257 | 277 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 441 aa Download sequence Send to blast |
MLDLNLCILS GDSSSGGTGL NPFNLSAPGV QSPISSSVVN ADQSNVIGDY GSSSNADCGF 60 TFSFSILNNS NDDQRGRTVA GRFSSDVYSQ RKWMVQQSVH PAKKGRRGPK SRSSEYRGVT 120 YYRRTGRWES HIWDSGKQVY LGGFDTAHSA ARAYDRAAIK FRGVHADINF NISDYSEEIK 180 QLCFGASMAD MQMSNFSKEE FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK 240 KYVYLGLFDS EIEAARAYDK AAIKYNGREA VTNFDQSSYE MEIAFESQNQ DMGDIDLNLG 300 IAPPCPSEDQ KDNLNVCATN FCSLNKSDSD RSELIMLENH SSVAVRAHPS FMSCPNFFPT 360 YQGRAMEKIM EVETLPNWGW RQIPISYGGA TSVPFFSTAA SSGFPSSPAA QLPPHLLRPA 420 PPFLRYHFPP TNSVPHFYCS T |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 9e-69 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 9e-69 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142222.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | B8B8J2 | 6e-97 | AP23_ORYSI; APETALA2-like protein 3 | ||||
TrEMBL | A0A0A0L210 | 0.0 | A0A0A0L210_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166397.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-81 | related to AP2.7 |