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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | C2H2 | ||||||||
Protein Properties | Length: 160aa MW: 17860.5 Da PI: 9.4565 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Cla018235 42 FECKTCNRHFPSFQALGGHRASH 64 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 15.5 | 5e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ Fs+ L H+r+H Cla018235 85 HECGLCGQEFSSGQALGGHMRRH 107 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.2E-12 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.31E-8 | 41 | 107 | No hit | No description |
SMART | SM00355 | 0.25 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.993 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 83 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.5E-9 | 85 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.868 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MAAKRIRQEE FQTSHIARTP TLLSYGNETS NHNFQPHNVA VFECKTCNRH FPSFQALGGH 60 RASHKRPRAP PEDPKDAPDL KQKMHECGLC GQEFSSGQAL GGHMRRHRVT PAAVAEKIPV 120 LKRSGSTRVM CLELDLNLTP LENDLKLLFG KMAPTVDLVL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681888 | 1e-139 | LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002. | |||
GenBank | LN713262 | 1e-139 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447526.1 | 5e-92 | PREDICTED: zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 2e-39 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A1S3BH21 | 1e-90 | A0A1S3BH21_CUCME; zinc finger protein ZAT11 | ||||
STRING | XP_008447526.1 | 2e-91 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 9e-42 | C2H2 family protein |