PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018083

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 169aa MW: 19243.5 Da PI: 9.4439

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018083	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	64	117	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL ++hvkSHLQ+YR+ Cla018083 64 PRLRWTPDLHLRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRS 117 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.68	60	120	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-30	60	118	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-15	62	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-22	64	119	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-9	65	116	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MEAAECSNNT RSSDDNKKSE SCSELGNEGS SSNSTIEENI INNNNHHQNK KPPTVRPYVR 60 SKLPRLRWTP DLHLRFVHAV ERLGGQENAT PKLVLQLMNI KGLNIAHVKS HLQMYRSKKT 120 NEPGQAVGDQ RLVMAESSGD RNIFNVSQIP MFQRYNQSYA SNIFRYETD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681884	5e-62	LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBank	LN713262	5e-62	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653702.1	1e-89	PREDICTED: probable transcription factor KAN4
Refseq	XP_011653703.1	1e-89	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A0A0L1D1	5e-88	A0A0A0L1D1_CUCSA; Uncharacterized protein
STRING	XP_008464217.1	1e-88	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-52	G2-like family protein