PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018052
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 895aa    MW: 98926.3 Da    PI: 6.5406
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018052genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17316415198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k l+ sd+++ grlv+pk +ae++   ++++e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l +++
  Cla018052 316 FEKMLSASDAGRIGRLVVPKACAEAYfpPISQPEGLPIRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMGF 413
                89**************************555566778***************9989999999***9.********************876.777777777 PP

                E- CS
         B3  97 fr 98 
                ++
  Cla018052 414 RK 415
                66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.1E-4442IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.103.6E-29307420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-19313415IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-22314415No hitNo description
PfamPF023622.5E-15316415IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194316417IPR003340B3 DNA binding domain
SMARTSM010191.3E-19316417IPR003340B3 DNA binding domain
PROSITE profilePS5105013.991580630IPR011124Zinc finger, CW-type
PfamPF074968.9E-11585627IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MALRTCMNVS CGASSSTEWR KGWALRSGDF ATLCDKCGSA YDQSIFCDVF HLKDSGWREC  60
TSCGKHLHCG CIASKFLMEL HDSGGVNCIS CAKNLGLQTT STGEKLNGLG TSQVQNSGDL  120
QSFLVEDGNN DRITLIQSGN KTEGNELRQS HLSQSNNNNV SLVQMKHEEN CPSVRDVGYV  180
CSLESTQVTN GLNELAKQEI CKGDNGTKCT YDSLALGCGN SNPPPGVSID EKEDSKPSSP  240
LLLGSRSRNL TPKPARSVFN VGLDQNASMV SQVRVARPPA EGRGRNQLLP RYWPKITDQE  300
LQQISGASNS TVVPLFEKML SASDAGRIGR LVVPKACAEA YFPPISQPEG LPIRIQDVKG  360
KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKASSSS  420
IMQDSHPSAL STGGHSSEFF SSVFENLPIL SGHSSLLQSL KGNMDPQLNL LPGYFNQPGN  480
DTSWQKAEKQ DDKSRECLLL SSMLVPERKR TRNIGSKSKR LHIDCQDALE LKLTWEEVQD  540
LLCPPPTVKP SKFMVEDHEF EEYEEPPVFG KRSIFVVHST RGQEQWAQCD DCSKWRRLPV  600
DVLLPSKWTC LENIWDQSRS SCSTLEELTT RELENILRLN KEFKRQRTLA FNRPIQDHES  660
SGLDALANAA TLGDNASDPG TASVATTTKH PRHRPGCSCI VCIQPPSGKG KHKPTCMCNV  720
CMTVKRRFKT LMMRKKKRQS EREAEIAQKN QLKWSSRDET ELDNTARHVS LNLEPSANEA  780
QLMTNDSRSQ SNLVETGKDQ LDLNCHPDQE NDVQGVSNRV SMMSLVQIAS LPLETYLKQN  840
GLTSLLPELQ VSSASHAPAQ GTNEIEGALN DDGCFASAAQ DQESEGEQIC GKDQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-682944232131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1724735KRRFKTLMMRKK
2724737KRRFKTLMMRKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651831.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0A0LCL40.0A0A0A0LCL4_CUCSA; Uncharacterized protein
STRINGXP_008442317.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]