PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017966
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 264aa    MW: 29556.4 Da    PI: 9.4577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017966genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-082164344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+eE +++ +a +++  +   +W ++a++++ g+t  +++  +
        Cla017966 21 KWTPEENKRFENALALFDRDtpdRWLKVAAMIP-GKTVGDVVKQY 64
                     8*****************99*************.***99998877 PP
2Myb_DNA-binding47.54e-15127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
        Cla017966 127 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 171
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.3231772IPR017884SANT domain
SMARTSM007173.1E-81870IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-112075IPR009057Homeodomain-like
PfamPF002491.2E-62164IPR001005SANT/Myb domain
CDDcd001674.15E-72168No hitNo description
PROSITE profilePS5129420.486120176IPR017930Myb domain
SuperFamilySSF466891.44E-17121175IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-18123175IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.5E-13124171IPR009057Homeodomain-like
SMARTSM007172.1E-13124174IPR001005SANT/Myb domain
PfamPF002491.6E-12127171IPR001005SANT/Myb domain
CDDcd001679.92E-12127172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKRGIGILSP ATYLRNSGCS KWTPEENKRF ENALALFDRD TPDRWLKVAA MIPGKTVGDV  60
VKQYTELVED VSDIEAGLIP IPGYPVGNSF VLEWSNDGGG FSPMYLGAGK RGGSGRPPDQ  120
ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK YFIRQLTGGK  180
DKRRSSIHDI TTTHLFDSPI QPNLDKTSSS SYVEVTMAPL CGISSLGPKL LQDQIFLRGN  240
FHGCQNIGPY SPTVFQVQRE EQYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1722841173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-146LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-146LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442463.11e-180PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S3B5871e-178A0A1S3B587_CUCME; transcription factor DIVARICATA-like
STRINGXP_008442463.11e-179(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2476233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-104MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]