PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017925
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 695aa    MW: 78085 Da    PI: 4.7458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017925genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000135185571255
                H.HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 R.RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R R+ i +++ eLr+++P+ a      K s    Lek+++++ +Lq
  Cla017925 518 RdRQLIQDRIKELRQIVPNgA------KCSIDGLLEKTIKHMLYLQ 557
                447889*************66......999999***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-326182IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-6498568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00128502558No hitNo description
PROSITE profilePS508889.877507556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-5508572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0089622670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
METSSLNHLL KSLCTDSQWI YAVFWKIKHQ SPPILTWEDG YCNYSKLKKH MGSMTENGMI  60
KDNDEHITSY YGTNIYNGDS GSCSVEPAVA DMFCLQYALG EGTVGSVASS GNHSWVYLEN  120
IFTSNLSSAS IYEGPIEWLI QYASGIKTIL LVPVLPFGVL QLGSLQMVTE NLLVVAYIKD  180
SFNVINFVDG DACASVVPSP FQSLDEQTNF ATYMLEAENH GAIHDIKPPV STFNQFVTIQ  240
DVLTASRRIR PEILHFEKGH KGNMQGTSME EPFAPLYQSV SAGEVEFSDF ISLESLLPPC  300
SQLRNDETGL FENNPDILHS FSVDNVVGQQ SGHNLGTKKE YGTADNFFSL PDDCELQKAL  360
GPLFLAQKHT NEFSYDPFST IKDTTSSLLC SQDFKEGDME YLLEAMITAD DNSDDTFSNN  420
ISNASIAPLV AKSSLSAKTC QSESSAIVVD DPALWIIPEF RTTEIDRKNL TSLSTSSSIV  480
VNEREEHDHD TAQYKKGTKN SNSSRQMKVT SNTRQRPRDR QLIQDRIKEL RQIVPNGAKC  540
SIDGLLEKTI KHMLYLQRVT DQAEKLKQLA QKEDFDSENC NDLENEGVQP DGTSWTWAFD  600
IGSDLQVCPI VVEDLEYQGH MLVKMLCKDM GLFLEITQII RNLELTILKG VIERHSNNSW  660
AHFIVEAPRG FHRMDVFWPL MHLLQRKRNP ISCRI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137928.20.0PREDICTED: transcription factor EMB1444-like
TrEMBLA0A0A0LFI20.0A0A0A0LFI2_CUCSA; Uncharacterized protein
STRINGXP_008442512.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1071233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-46conserved peptide upstream open reading frame 7