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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 28384.8 Da PI: 5.5584 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Cla017922 60 YSCSFCRREFRSAQALGGHMNVH 82 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.26E-6 | 58 | 87 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MWRKQEEEEE ERERDDFDEY FEGSKTKTCF QYEESLSWEE QAFAEDAGRL GACVWPPTSY 60 SCSFCRREFR SAQALGGHMN VHRRDRARLN QSPNNNNNPN FTTTLSSSSS PSHHHLSTSP 120 NYHLPNPNPS PPNDGRSDPK AEKDEELRNS CSRVRDKQHV ENGVLDEGLN LGFGRSRPTT 180 GLFCEDDEDA GAVTGCKRRK TESSIQFYVK SSSLVENQHH HHIQSEVIEL SSTSLHDLDL 240 ELRLGGLSKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-12 | 55 | 82 | 2 | 29 | superman protein |
2l1o_A | 5e-12 | 55 | 82 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 2e-71 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 2e-71 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016899605.1 | 1e-94 | PREDICTED: uncharacterized protein LOC103487126 | ||||
TrEMBL | A0A0A0LD32 | 1e-103 | A0A0A0LD32_CUCSA; Uncharacterized protein | ||||
STRING | XP_008443569.1 | 2e-54 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3525 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 3e-22 | zinc-finger protein 10 |