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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 70aa MW: 7733.36 Da PI: 10.7953 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 134.2 | 3.1e-42 | 4 | 70 | 4 | 70 |
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + veakG+nP livll+vgglll+flvgny+ly yaqknlPP+kkkPvskkk+kre+lkqGv++PGe Cla017831 4 NDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE 70 789***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 1.0E-4 | 3 | 70 | No hit | No description |
Pfam | PF04689 | 1.3E-39 | 6 | 70 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
NVINDVEAKG FNPALIVLLL VGGLLLIFLV GNYALYLYAQ KNLPPKKKKP VSKKKMKRER 60 LKQGVSAPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 7e-99 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 7e-99 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137812.1 | 1e-41 | PREDICTED: DNA-binding protein S1FA-like | ||||
Swissprot | Q42337 | 4e-15 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A0A0LAW3 | 3e-40 | A0A0A0LAW3_CUCSA; DNA-binding protein S1FA | ||||
STRING | XP_004165146.1 | 5e-41 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 |