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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB_related | ||||||||
Protein Properties | Length: 773aa MW: 85791.4 Da PI: 6.7323 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.1e-08 | 52 | 94 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + Cla017807 52 AWTREEEESFFTALRQVGKN-FEKITCHVQ-SKNKDQVRHYYYRL 94 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-10 | 44 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 47 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.623 | 48 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-5 | 49 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-5 | 52 | 95 | No hit | No description |
Pfam | PF00249 | 9.4E-6 | 52 | 94 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 773 aa Download sequence Send to blast |
MQTDLIVSSN AETHLHSETI VAHVGDQGIA ASTPDHVIEP LPAKRPTRQW AAWTREEEES 60 FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KNVRKRPLQG ENCPPPIPNA 180 VSNQSSRALG HDGRAVKLVL VDTQNIPKLG PRKTTSRRNV NVGINCGNNG GYPTILKPSR 240 QRRKSEGGVS SAAYKKWEKA AIAGVSLVAD AAEHLERTVT NKDVLRDQNT LGKKNTDPAG 300 SPLLLLPPLQ PNSLIDVASM KLKLQLFPVD DGTRRALESD KHNPHLELTL STRKKISSVL 360 EHLSRKWGNS SAAHGELMLF PYSIQRKSLA DCQRWTQDSF ESAGDVYATI GRPQVFRLRY 420 GWCSNAEHGS VELQTSVPAY CIQDDHIMDA RDIEGRIMDA ASLDAQPVDF NKDEVGTLSK 480 NMSTPTAPCE TERCISARSN DDLPRSSDPV LNMSWNKKNA ADRTIIQRSD DVDDLKLSNG 540 TSLSAGEWAD SLTNISIGDL LSGVSQDVDA NCVDTPLAEG TQCLQQIPFS CDSFDAAIAA 600 HISRQQDKTV SQPTLASHAS SIWDAEETCD AFSFQKNPVI LQEVPSSFTF SSLRGCKHVA 660 RINSMGSNHM TEDLPRSESP AEDHIQGDPM DECQSDPQIS ETKNIDELAD IYWPDSLGPL 720 DLDLPSTNKY HNEELILGDS LSSLNRLIAS SLDAFQNCSF FGFDKKEPSA FNS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442695.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_008442696.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_008442697.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_016899753.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A1S4DUV7 | 0.0 | A0A1S4DUV7_CUCME; TSL-kinase interacting protein 1 isoform X1 | ||||
STRING | XP_008442695.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9883 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 0.0 | TSL-kinase interacting protein 1 |