PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017797
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 306aa    MW: 34132.9 Da    PI: 6.8575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017797genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+d++ ++G+g +W + +++ g++R++k+c++rw++yl
        Cla017797 14 KGPWSPDEDAKLKDYIDKHGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding42.81.2e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++ ++ +  G++ W+ Ia+ ++ gRt++++k++w++
        Cla017797  69 GDFSEEEDTIICNLYTTIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.232966IPR017930Myb domain
SuperFamilySSF466892.29E-2711109IPR009057Homeodomain-like
SMARTSM007172.3E-111364IPR001005SANT/Myb domain
PfamPF002494.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-241569IPR009057Homeodomain-like
CDDcd001673.78E-81662No hitNo description
SMARTSM007178.9E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129416.33967117IPR017930Myb domain
PfamPF002491.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2470117IPR009057Homeodomain-like
CDDcd001674.74E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRTPCCDKA NVKKGPWSPD EDAKLKDYID KHGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGD FSEEEDTIIC NLYTTIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLTSP  120
HGIMVPQFIQ PSSTNSSSSS SSPSSYSNNG PFSILLEPIS FSSNLLLNPT TTTNNNTTPL  180
FHHQLSQDQN FMMSPMMGAE NNNYHVKLAD HRLLVFGGDQ GSSSSSDVDN GGGVEEKRRS  240
SSSSSSMSFV DCSRVVNGWN NERQLEDQGM WENSNMENNY SPFMDYGLEE IKQLISSNTC  300
TTNVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-141LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-141LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899626.11e-158PREDICTED: transcription factor RAX2
TrEMBLA0A1S4DUG61e-157A0A1S4DUG6_CUCME; transcription factor RAX2
STRINGXP_008442708.11e-157(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-75myb domain protein 68