PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017787
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 232aa    MW: 27850.2 Da    PI: 7.042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017787genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEd +l   v+++G + W++Ia+  g+ R++k+c+ rw++yl
        Cla017787 14 RGPWLEEEDRQLTIFVTRMGERKWDLIAKASGLERSGKSCRFRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding47.93e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r+r   eE+e+++++++++G++ W++Ia+ ++ gRt++++k++w+++l
        Cla017787  67 RDRINSEEEEIILKLHNKWGNK-WSRIAQWLP-GRTDNEIKNYWRSHL 112
                      567789****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.095965IPR017930Myb domain
SuperFamilySSF466891.08E-2511108IPR009057Homeodomain-like
SMARTSM007176.3E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-111461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-201568IPR009057Homeodomain-like
CDDcd001671.16E-61661No hitNo description
PROSITE profilePS5129417.8666116IPR017930Myb domain
SMARTSM007171.8E-1266114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2269115IPR009057Homeodomain-like
PfamPF002495.2E-1372112IPR001005SANT/Myb domain
CDDcd001671.20E-873112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MANQSALQSE RLRRGPWLEE EDRQLTIFVT RMGERKWDLI AKASGLERSG KSCRFRWLNY  60
LRPNLKRDRI NSEEEEIILK LHNKWGNKWS RIAQWLPGRT DNEIKNYWRS HLRKKFPTQL  120
EECKVKHGKQ DEVSLKKCGV GSPIRHDHNE REDISCNHFG FSNQEIMSSP YEIRLSNWIS  180
HQLANEEQEV NHHHEDCNSL EFCFCYPNMN FAERDDQTDR FWDSLASLWD ME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25121185110B-MYB
1mse_C5e-25121162105C-Myb DNA-Binding Domain
1msf_C5e-25121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818414e-57LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132584e-57LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442723.11e-147PREDICTED: transcription factor MYB114-like
SwissprotQ9SCP12e-49MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A1S3B7171e-146A0A1S3B717_CUCME; transcription factor MYB114-like
STRINGXP_008442723.11e-147(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.18e-52myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]