PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017741
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 538aa    MW: 59214.3 Da    PI: 6.9481
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017741genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.3e-19157243186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   s s++p+f+q+e
  Cla017741 157 EWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GVSISHWPWFKQME 243
                5*************************************777778899************************98.677889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-21155245No hitNo description
Gene3DG3DSA:3.40.1160.102.2E-73293531IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.586297532IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.53E-58298531IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.78E-123300532No hitNo description
PfamPF006962.2E-25301511IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MASCDDEFSL LSDDHHHHQH HQSTTNHHHV PTPHHIHQSY ASHRFTPRAS SVHAPPQPPP  60
NQPAQPILAP SGSPKKIGGP IDEEEEEEDA EDYGDAAFCS SSFDNGDPNR LGVGVDVRVE  120
KRKDQSDELG EEGGSYSSYK RAKPSSSGGE YRKDREEWSD AAISCLLDAY TEKFTQLNRG  180
NLRGRDWEEV AATVSERCEK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG VSISHWPWFK  240
QMEQIVGNSL TMKVVSDEDR SVASSGNTPR ISKRYVLPTP NTAGHMNNVK PKAVTSPRWR  300
RVVFKISGTA LAGTGPNNID SKVAMAIARE VVMACRLGVE VAIVVGGRNF FCADSWVTTT  360
GLDRCTAYQI GMMATVMNSI LLQSAIEKMG VQTRVQSAFM LQEVAEPYSR QRAIRHLEKG  420
RVVIFGGIGA GTGNPLFSTD TAAALRASEI HAEAVLKGTN VDGVYDCNSQ DNNFTFKHIS  480
FRELVSRGAT SMDMTALTFC EENNIPVVVF NLLEPGNISK ALCGEQVGTL IDQNGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-612935313239Uridylate kinase
3ek5_B1e-612935313239Uridylate kinase
3ek5_C1e-612935313239Uridylate kinase
3ek5_D1e-612935313239Uridylate kinase
3ek5_E1e-612935313239Uridylate kinase
3ek5_F1e-612935313239Uridylate kinase
3ek6_A1e-612935313239Uridylate kinase
3ek6_B1e-612935313239Uridylate kinase
3ek6_C1e-612935313239Uridylate kinase
3ek6_D1e-612935313239Uridylate kinase
3ek6_E1e-612935313239Uridylate kinase
3ek6_F1e-612935313239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442786.10.0PREDICTED: uncharacterized protein LOC103486561
TrEMBLA0A1S3B7830.0A0A1S3B783_CUCME; uncharacterized protein LOC103486561
STRINGXP_008442786.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein