PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017729
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 573aa    MW: 63510.1 Da    PI: 4.7951
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017729genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.52.7e-301332362102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.X..TTSEEEEESXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.k..ekiweFkhksFkkgkkelle 95 
                   Fl k+++i++d++l+ ++sw + g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+Y    v+   +     k  ++ weF+++ F++gkk+ll+
     Cla017729 133 FLWKTFDIVDDPALDPIVSWGSAGQSFVVWDPVEFSRVILPSNFKHNNFSSFVRQLNTYVGIAVQPLMAAVGFrKidTDKWEFANEAFRRGKKHLLK 229
                   99*********************************************************888888877653334145999***************** PP

                   XXXXXXX CS
  HSF_DNA-bind  96 kikrkks 102
                   +i+r+ks
     Cla017729 230 NIQRRKS 236
                   *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-46129234IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-31129234IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-33130234IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-11133156IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-27133234IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-11171183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-11184196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MKPIEEGESV SPIEVSSSSA QSEFDAAGFS SDPELMLLPF SRPLMGSESF SPCGSFLEDT  60
AAGLSMVSIG FSSSPSTGDF LAENPMPSSS AHHMFDVMLE PDKGALDPFV VPSMGSDVPQ  120
PLESLHGQFV PPFLWKTFDI VDDPALDPIV SWGSAGQSFV VWDPVEFSRV ILPSNFKHNN  180
FSSFVRQLNT YVGIAVQPLM AAVGFRKIDT DKWEFANEAF RRGKKHLLKN IQRRKSPHSQ  240
QIGSLIGPSS GGGKSGIEDE IGRLKKERRM LMQEVVELQQ QQKGTAQQVT TVNRRLQSAE  300
QRQKQMISFL AKLLRNPEFL FRLQKKKEQK DIDSPRTKRK FVKQHKHEAD GFTPPMEGQI  360
VKYQSDWESL ARSSTALDLN PGLPEGPFAY LLEGVFGELG SIPESMPNFQ FKNVSSSDVI  420
ASKELAFHHG IVKPTEELRR VEASNMSMED QHFKGKSIES PPESNPDYFL SLTEDILQSS  480
HQETGSVIKP EEIWNAYLNV DAGSSGSSNE LWSNPVGFED PFLQVSSRLS TIWDLGSQQA  540
GDSGTDNWSA SGFPFDDPDS QVYPKNAEDS DNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1913023417120Heat shock factor protein 1
5d5u_B2e-1913023426129Heat shock factor protein 1
5d5v_B2e-1913023426129Heat shock factor protein 1
5d5v_D2e-1913023426129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6820800.0LN682080.1 Cucumis melo genomic scaffold, unanchored_scaffold00259.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651989.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A0A0LDV80.0A0A0A0LDV8_CUCSA; Uncharacterized protein
STRINGXP_004137871.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.17e-80heat shock transcription factor A3