PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017664
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 284aa    MW: 31495.5 Da    PI: 9.6476
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017664genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3107.46.9e-3442152199
                EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                f+k ltpsdv+k++rlv+pk++ae++            g +  ++  l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+vvF++++r+
  Cla017664  42 FEKPLTPSDVGKLNRLVIPKQYAEKYfplspsaavaaaGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRD 141
                99*****************************999999977777999*************************************************99999 PP

                EE..EEEEE-S CS
         B3  89 efelvvkvfrk 99 
                + +l++++ r+
  Cla017664 142 GDRLFIGWKRR 152
                999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-4237156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-3240153IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-3040142No hitNo description
SMARTSM010191.1E-2842153IPR003340B3 DNA binding domain
PROSITE profilePS5086314.98842153IPR003340B3 DNA binding domain
PfamPF023627.5E-3142152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSINHFSPGF HRPLFSTPQL PIMLNPKSSL SVAAAADLLP MFEKPLTPSD VGKLNRLVIP  60
KQYAEKYFPL SPSAAVAAAG DSADKGLLLS FEDESGKIWR FRYSYWNSSQ SYVLTKGWSR  120
FVKEKRLDAG DVVVFERHRR DGDRLFIGWK RRSAPSPADT AVATASGGGG WTRMFCSTNP  180
YPSSHHHHHH HHLPSPPYQS SSDSPHAESS VQSQTVSVGN SKILRLFGVD LECQTDMSEP  240
EPPSTLSVGS SLSLSGRDPT RHSFYTHYSS PLPHHMRMIK LPLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-474115413119DNA-binding protein RAV1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-174LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-174LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442877.11e-171PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ9FNI34e-65Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A1S3B6T31e-170A0A1S3B6T3_CUCME; B3 domain-containing protein At2g36080-like isoform X1
STRINGXP_008442877.11e-171(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-63B3 family protein