PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cla017624

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TALE

Protein Properties

Length: 712aa MW: 78123.6 Da PI: 7.4506

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017624	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	398	435	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Cla017624 398 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 435 664459******************************88 PP
2	BELL	124.2	5.1e-40	262	333	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag gsa+ Yt+lAl++iS++FrcLkdai++qi Cla017624 262 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQI 333 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	9.6E-62	185	331	IPR006563	POX domain
Pfam	PF07526	2.4E-49	190	330	IPR006563	POX domain
PROSITE profile	PS50071	12.163	376	439	IPR001356	Homeobox domain
SMART	SM00389	6.4E-9	379	443	IPR001356	Homeobox domain
CDD	cd00086	1.34E-11	379	440	No hit	No description
SuperFamily	SSF46689	4.71E-17	380	446	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-29	382	446	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	396	435	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence Send to blast
MATYLHGNSD QFQSSDGGLQ TLVLMNPSYV QFSDTPPPPP PSHPNLVFFN SPSTAANSYT 60 TLTQAPPSSH TQQFVGIPLQ TTAASPTSQD HSSHPLNPHH DISALHGFAP RLHHNIWNQI 120 DPSTAARESA RAQQGLSLSL SSQHQQGFGS RDVQSQTQQA ASGEENMRIS GGSSSSASGV 180 TNGVAGIQGV LISSKYLKAA QELLDEVVNV TQNGIKSESS PKKATGNQSK MIGDAPAATG 240 TADGSLEGET DGKRAAELTT TERQEIQMKK AKLISMLDEV EQRYRQYHHQ MQIVISSFEQ 300 AAGAGSARTY TALALQTISK QFRCLKDAIT GQIRAANKSL GEEECIGRKM EGSRLKFVDN 360 HLRQQRALQQ LGMIQHNAWR PQRGLPERSV SILRAWLFEH FLHPYPKDSD KHMLAKQTGL 420 TRSQVSNWFI NARVRLWKPM VEEMYMEEIK EQEQNGSGST PATEKSNDDS VSKSIAPPPE 480 TKSPNSKQEE KSPNPNQNVH PSISISNSSG GNVRNPSGFT LIGASSELDG ITRGSPKKQR 540 GPEILHSSNN NVPFINMDIK PREEEEHQNH NHNHNPHHNH HLPMKFDDER QNRDGYSFLG 600 QPHFNIGGFA QYPIGEIARF DADQFTPRFS GNNGVSLTLG LPHCENLSLN AATHQSFLPN 660 QSIHLGRRTE IGKPTDFSAI NASTAHSSTA FETINIQNGK RFAAQLLPDF VA

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence Send to blast

MATYLHGNSD QFQSSDGGLQ TLVLMNPSYV QFSDTPPPPP PSHPNLVFFN SPSTAANSYT  60
TLTQAPPSSH TQQFVGIPLQ TTAASPTSQD HSSHPLNPHH DISALHGFAP RLHHNIWNQI  120
DPSTAARESA RAQQGLSLSL SSQHQQGFGS RDVQSQTQQA ASGEENMRIS GGSSSSASGV  180
TNGVAGIQGV LISSKYLKAA QELLDEVVNV TQNGIKSESS PKKATGNQSK MIGDAPAATG  240
TADGSLEGET DGKRAAELTT TERQEIQMKK AKLISMLDEV EQRYRQYHHQ MQIVISSFEQ  300
AAGAGSARTY TALALQTISK QFRCLKDAIT GQIRAANKSL GEEECIGRKM EGSRLKFVDN  360
HLRQQRALQQ LGMIQHNAWR PQRGLPERSV SILRAWLFEH FLHPYPKDSD KHMLAKQTGL  420
TRSQVSNWFI NARVRLWKPM VEEMYMEEIK EQEQNGSGST PATEKSNDDS VSKSIAPPPE  480
TKSPNSKQEE KSPNPNQNVH PSISISNSSG GNVRNPSGFT LIGASSELDG ITRGSPKKQR  540
GPEILHSSNN NVPFINMDIK PREEEEHQNH NHNHNPHHNH HLPMKFDDER QNRDGYSFLG  600
QPHFNIGGFA QYPIGEIARF DADQFTPRFS GNNGVSLTLG LPHCENLSLN AATHQSFLPN  660
QSIHLGRRTE IGKPTDFSAI NASTAHSSTA FETINIQNGK RFAAQLLPDF VA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	385	443	5	63	Homeobox protein Meis2
3k2a_B	4e-16	385	443	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442920.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3B6D1	0.0	A0A1S3B6D1_CUCME; BEL1-like homeodomain protein 1
STRING	XP_008442920.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-167	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]