PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017529
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SBP
Protein Properties Length: 264aa    MW: 28529.7 Da    PI: 10.0433
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017529genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.91.8e-158364876
               SEEETTT--SS--S-STTTT-------S- CS
        SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76
               rfh+l efD++krsCrrrLa+hnerrrk+
  Cla017529  8 RFHQLPEFDQGKRSCRRRLAGHNERRRKP 36
               9**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.332136IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.8E-4723IPR004333Transcription factor, SBP-box
PfamPF031102.4E-8835IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-12840IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNRKSSLRFH QLPEFDQGKR SCRRRLAGHN ERRRKPPPGS LLSTRYGRFS SSIFENSSRV  60
GSFLMDFSAY PKLTGKDVWS SGTKASERVP GNQSITSMGK YVPHPWQSSS ENNPSELLLP  120
VPPAGGTSFS GPGNPSGGCI NGVADSSCAL SLLSNQTWGS RNRTTAVEVN ALLNAEGALV  180
AQTATPHAAT NHFPTMSWGF KGNEVPASSS LDLTSDLGLN HQVSQALTSS FSGDVQFPHQ  240
GRRPYMELGH SGAFDSTQHL HWSL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136576.11e-162PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A0A0LBC11e-161A0A0A0LBC1_CUCSA; Uncharacterized protein
STRINGXP_004136576.11e-162(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-25squamosa promoter binding protein-like 9