PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 375aa MW: 41313.1 Da PI: 5.4496 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.4e-08 | 214 | 261 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Cla017516 214 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 261 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-15 | 208 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.72E-9 | 208 | 265 | No hit | No description |
PROSITE profile | PS50888 | 14.519 | 210 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-14 | 210 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-6 | 214 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 216 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MEIKVGTVVG SSPIGRQSDD TGLESLQFCE EIQGLMTIPA ENASSFTALL ELPATQALEL 60 LHSPDSGGGA TAAVVNDDSF QHCIKDVPKP YFSAFNCNLT FPTNSALIER AAKLSVLAEE 120 HSPETTSSVL LNSSVNLEKV KNEPTTETDS NPNPLQTLIS DPTVENTNQR SAKRKEREKK 180 GKGSTKKSKN ESNEDAEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC 240 NKISGTALVL DEIINHVQSL QRQVEFLSMR LAVVNPRVDF NIDSILAAEN EPVLESSFPT 300 MVTPLMWPEI PVSGTRQQYQ PQWHFDGSVN QQAWARDEHN HHNFSTPENS LLSYDSSANS 360 GKKLLENSNS SVLLN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136583.1 | 0.0 | PREDICTED: transcription factor bHLH48 | ||||
Swissprot | Q3EAI1 | 6e-94 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A0A0LEI6 | 0.0 | A0A0A0LEI6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136583.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004161487.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-95 | bHLH family protein |
Publications ? help Back to Top | |||
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