PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017373
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 322aa    MW: 35853.6 Da    PI: 4.4986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017373genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l++++   G g+W++ ++  g+ R++k+c++rw +yl
        Cla017373 14 KGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.52.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ TteE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
        Cla017373  67 RGNITTEEEDVIIKLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20564IPR009057Homeodomain-like
PROSITE profilePS5129416.009961IPR017930Myb domain
SuperFamilySSF466891.34E-2711108IPR009057Homeodomain-like
SMARTSM007171.0E-101363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001677.62E-81661No hitNo description
PROSITE profilePS5129425.85362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2565116IPR009057Homeodomain-like
SMARTSM007173.4E-1666114IPR001005SANT/Myb domain
PfamPF002493.9E-1567112IPR001005SANT/Myb domain
CDDcd001674.48E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRRPCCEKV GLKKGRWTAE EDDRLKKYIL ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TTEEEDVIIK LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIQTFR  120
RRNDDGDSVI VDVARLSLPP RRKGGRGRRR KEEVEAEVEV EVEVEAAREI LSPPTPELER  180
ESTVCGGVDD PTEEEIINKP PEGRHDVGGS VTLNYNNDVF GEDDMSLDLD ELLTNVEMEW  240
DDDYAIGTCE SNNAHASVAR AVSDAGAAEL DVGGDCSSIS SSFSLNSPWN WESFAGGLEW  300
DAGEDFAATV AESDAVISWL FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231211625128MYB TRANSFORMING PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-91LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-91LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454301.11e-152PREDICTED: myb-related protein 308-like
RefseqXP_022984058.11e-152myb-related protein P-like
TrEMBLA0A1S3BYE21e-150A0A1S3BYE2_CUCME; myb-related protein 308-like
STRINGXP_008454301.11e-151(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-71myb domain protein 111