PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017143
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 235aa    MW: 25787.2 Da    PI: 8.6449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017143genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.1e-1468114354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  Cla017143  68 KNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVVERVKEL 114
                58*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.78365114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-1268117No hitNo description
PfamPF000101.5E-1168114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1469123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1469124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-1271120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDQSSELYRL LAQNGAFSLG GAGGSCGFPA TQSMSSSSSY YPLDKSTAAA TSEAAVPSAH  60
DRALAALKNH KEAEKRRRER INSHLDKLRT LLPCNSKTDK ASLLAKVVER VKELKNETSE  120
IAELESFPSE TDEISVLSGE QSVDGRLVFK ASLCCEDRSD LIPDLNDILN SLQLKTLRAD  180
IVTVGGRIRN VLLIAANHHH SLESVHFLQN ALKSLLERSN SSLTSKRRRL VLHHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022973344.11e-138transcription factor bHLH106
SwissprotO806741e-72BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1S3CMN21e-132A0A1S3CMN2_CUCME; transcription factor bHLH106-like
STRINGXP_008464948.11e-133(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]