PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017100
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 182aa    MW: 21182.8 Da    PI: 7.2127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017100genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-14243748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
        Cla017100  2 EEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 43
                     9***************************************97 PP
2Myb_DNA-binding55.61.3e-174992146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
        Cla017100 49 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 92
                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.632143IPR017930Myb domain
SuperFamilySSF466892.11E-26290IPR009057Homeodomain-like
CDDcd001678.43E-9243No hitNo description
PfamPF002498.6E-13243IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-19250IPR009057Homeodomain-like
SMARTSM007174.6E-5245IPR001005SANT/Myb domain
PROSITE profilePS5129425.8084498IPR017930Myb domain
SMARTSM007175.2E-154896IPR001005SANT/Myb domain
PfamPF002491.5E-164992IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-255198IPR009057Homeodomain-like
CDDcd001673.26E-125392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEEDLILINY IANHGEGVWN SLAKSAGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQLLI  60
MELHAKWGNK WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ SHVFHTPQTN VLFSQDHQMN  120
EQAASSSSCQ VSYTMDPMET YSPPTYSQNI DAFSVPMPPT DNSNDNYWSM EDLWSMQLLN  180
AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2129813108B-MYB
1h8a_C1e-2029833128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818414e-84LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132584e-84LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141095.11e-122PREDICTED: myb-related protein 305-like
SwissprotP813915e-89MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S3B8861e-118A0A1S3B886_CUCME; myb-related protein 305
STRINGXP_004141095.11e-121(Cucumis sativus)
STRINGXP_004168850.11e-121(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.14e-87myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]