PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016980
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 230aa    MW: 26154.4 Da    PI: 9.9289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016980genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++q+G g+W++ + + g+ R++k+c++rw +yl
        Cla016980 14 KGPWTPEEDHKLLAYIQQHGHGSWRALPPKAGLERCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.81.9e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia+++  +Rt++++k++w+++l
        Cla016980  67 RGKFSSQEEQAIIQLHALLGNR-WSAIASHLH-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.405961IPR017930Myb domain
SuperFamilySSF466896.74E-3011108IPR009057Homeodomain-like
SMARTSM007179.6E-131363IPR001005SANT/Myb domain
PfamPF002498.2E-161461IPR001005SANT/Myb domain
CDDcd001671.08E-91661No hitNo description
PROSITE profilePS5129425.28262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2765117IPR009057Homeodomain-like
SMARTSM007175.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
CDDcd001674.68E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRSPYCDSS GLKKGPWTPE EDHKLLAYIQ QHGHGSWRAL PPKAGLERCG KSCRLRWTNY  60
LRPDIKRGKF SSQEEQAIIQ LHALLGNRWS AIASHLHKRT DNEIKNYWNT HLKKKLIQMG  120
MDPITHKPMK NNNEETKSKD NINSTLSHMA QWETARLEAE ERLARQSKFQ PIPSFNQNRF  180
GSSGDVESPT TSSTGQRGVA DDMQSSGSGG AESKSYCWPD TILGEFLRFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818414e-51LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132584e-51LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443378.11e-139PREDICTED: transcription factor MYB76-like isoform X2
SwissprotQ9LE634e-94MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S3B8N31e-137A0A1S3B8N3_CUCME; transcription factor MYB76-like isoform X2
STRINGXP_008443377.11e-137(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.14e-85myb domain protein 16