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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla016926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | C2H2 | ||||||||
Protein Properties | Length: 592aa MW: 63426.6 Da PI: 9.507 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Cla016926 42 FICEVCNKGFQREQNLQLHRRGH 64 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00045 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Cla016926 118 WKCDKCSKRYAVQSDWKAHSKTC 140 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12171 | 2.2E-5 | 41 | 64 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 42 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 42 | 64 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.67E-8 | 42 | 64 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 83 | 113 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 106 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.67E-8 | 113 | 138 | No hit | No description |
SMART | SM00355 | 140 | 118 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MRGQQQQQQQ PPPPPPSNSS TPPNPQQPQK KKRNQPGTPS KFICEVCNKG FQREQNLQLH 60 RRGHNLPWKL KQKSTKEPKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC 120 DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARHPPNL 180 GSAIGSHLYG GNSNVGLTLS QVPQISSLQD HPNIPQSPHD VLRLGGGRTG QFTHLLPPSI 240 GSSFRPPPQQ AMPSSNAAAF FLSDQTNQSS FHEDHHQSQS QQGLFGNKAF HGLMQFPSDI 300 QTHASNNNNN SASNLFNLGF ISNPTGDNTS NMNSNNDTNT NNSNSSSNNN NNLPSSLLNQ 360 FNGTNNGNND GPASNIFAVN IMGDQINSAA VPSLYSTAAT GGCSSGTSGG AIPHMSATAL 420 LQKAAQLGST TSSSNTTATL LRTFGSSSSS GGKATDRTLF PPSYGGVVFG ENESNLQDLM 480 NSFTTGSSGS GMFGSGMSSF GGFEGSNRNN MESMEDPTKL QQNLSTVSVG GGADRLTRDF 540 LGVGQVLRSM SGGGGYSQRE HKQPPQGMVL EGNESNTAPS SQAFGGGNGN YQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-34 | 114 | 175 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 7e-34 | 114 | 175 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681904 | 0.0 | LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140400.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A0A0KMB9 | 0.0 | A0A0A0KMB9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140400.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004157851.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 4e-97 | indeterminate(ID)-domain 5 |