PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016925

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 428aa MW: 48061 Da PI: 7.0706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016925	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	323	357	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 i +++ L++++ + +K + a++L++++ YIk Lq Cla016925 323 IGDRITALQQIVSPF-----GKTDTASVLTETIGYIKFLQ 357 678999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.226	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-10	322	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.09E-5	322	361	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.9E-9	322	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MAEECNESSV ATSNSNPSNW WDINHNHHHH HHPSLSYNSH WLLQNPNSNS SCEEDVSIST 60 SSFTNNNSNH SPLTSNHLLP HHPSDNNHLW TQVLLNIGNG VELQSNEEDI EANFLETISS 120 RSMSTTGIFE PTACSDYLKK MDTTNNNNNN NWDDTFQSFT NNNNGLLTTS HHTHMLQNDR 180 FLKLSNLVNT WSIALPSSQQ AHLRHLIDDQ HDHLPTSIVP THEPDGAVPH SGLDPCASTI 240 LRRSLHNQNY GDYISFNGRL PKPVAGINGS SHNPCFKSSL NLSADTKKQI HQISSPTKIS 300 GRGSGVLSEG KKKRSMQQPK VKIGDRITAL QQIVSPFGKT DTASVLTETI GYIKFLQEQV 360 QLLSNPYMKT NSYKDPWQNL ERKEVKGDGK TDLRSRGLCL VPISCTPQVY RENTGSDYWT 420 PYRGCFYR

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MAEECNESSV ATSNSNPSNW WDINHNHHHH HHPSLSYNSH WLLQNPNSNS SCEEDVSIST  60
SSFTNNNSNH SPLTSNHLLP HHPSDNNHLW TQVLLNIGNG VELQSNEEDI EANFLETISS  120
RSMSTTGIFE PTACSDYLKK MDTTNNNNNN NWDDTFQSFT NNNNGLLTTS HHTHMLQNDR  180
FLKLSNLVNT WSIALPSSQQ AHLRHLIDDQ HDHLPTSIVP THEPDGAVPH SGLDPCASTI  240
LRRSLHNQNY GDYISFNGRL PKPVAGINGS SHNPCFKSSL NLSADTKKQI HQISSPTKIS  300
GRGSGVLSEG KKKRSMQQPK VKIGDRITAL QQIVSPFGKT DTASVLTETI GYIKFLQEQV  360
QLLSNPYMKT NSYKDPWQNL ERKEVKGDGK TDLRSRGLCL VPISCTPQVY RENTGSDYWT  420
PYRGCFYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140441.1	0.0	PREDICTED: transcription factor bHLH111
TrEMBL	A0A0A0KQW5	0.0	A0A0A0KQW5_CUCSA; Uncharacterized protein
STRING	XP_004140441.1	0.0	(Cucumis sativus)
STRING	XP_004166044.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-50	bHLH family protein