PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016907
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 395aa    MW: 44871.7 Da    PI: 9.4844
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016907genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.52e-1959155286
   trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt qe++ Li+a++ ++er ++++              + +W++v ++++++g++rs++qC++kw+nl ++ykk++e e++  +++  ++p + ++e
  Cla016907  59 WTLQETMILITAKKLDDERRNKANlgptstdpaarkGGELRWKWVENYCWSHGCQRSQNQCNDKWDNLLRDYKKVREYESRACDQQPPQIPSYWKME 155
                **************99999998866666677776557799*****************************************99999999*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.96951127IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.2E-653129IPR009057Homeodomain-like
PfamPF138371.8E-1258155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSDPPTASSE PPHHHHHHQQ LLHLPVIHGG ASGGAVRMNT AAATSSSTVI VREYRKGNWT  60
LQETMILITA KKLDDERRNK ANLGPTSTDP AARKGGELRW KWVENYCWSH GCQRSQNQCN  120
DKWDNLLRDY KKVREYESRA CDQQPPQIPS YWKMEKHERK DKNLPSNMAF EVYQALNDVV  180
QRKFSQRPSN STTTGLLLLP PPSALPPPPP PQSTATNSPP LSESSSSGTE SSDRKKKEKM  240
ETKRRKMGDN IGRSIERSVS ALAQTLHNCE EQREIRHQQL MELQKRRLQI EETRNHIHRQ  300
GIADLVTAVA NLSAGINNRT SRLEGYGCLY SGEEVRMLKE QNEAMQAELM NVKSELSQLR  360
DQMPSLMQTM MHNMIHNIPP PPPPSTSSMK VDMAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238RKKKEK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819000.0LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456886.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A1S3C4820.0A0A1S3C482_CUCME; trihelix transcription factor PTL-like
STRINGXP_008456886.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-49Trihelix family protein