PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016849
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YA
Protein Properties Length: 300aa    MW: 32854.4 Da    PI: 8.362
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016849genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32155211158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++Il+RRq+Rakle+++k+ +++rkpylheSRh hAl+R RgsgGrF
  Cla016849 155 DGPIYVNAKQYHGILRRRQSRAKLEAQNKV-IRNRKPYLHESRHLHALNRVRGSGGRF 211
                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-36153214IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.256154214IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.5E-28157211IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-24157179IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860159179IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-24188211IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTMTLSDNIS LKLETPPKPH HKQLGVGLQL PDQESSTAHS IGQSLHRVCA MEVQNAQEQC  60
ISSESGQDEN CGESVENQLK PAILFSNPEF MFNSLQVDGS HSMTRVSYPY IDPYYGGLLC  120
GGYSQQGFNS QAQVNPNAVG TAPARVPISY GLAEDGPIYV NAKQYHGILR RRQSRAKLEA  180
QNKVIRNRKP YLHESRHLHA LNRVRGSGGR FLSVKKNQPS DRTNPPTTLC QQKSTPDSNT  240
YSPETGDHGT MTATCSEITS ISNGSVMFGW SDSQFSAASS NASGRMEQYR GRYVHGGNGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20157225472NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023546978.11e-160nuclear transcription factor Y subunit A-3-like
RefseqXP_023546979.11e-160nuclear transcription factor Y subunit A-3-like
TrEMBLA0A2N9J0I44e-88A0A2N9J0I4_FAGSY; Uncharacterized protein
STRINGXP_010047511.11e-86(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-47nuclear factor Y, subunit A3