PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016224
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 307aa    MW: 34940.5 Da    PI: 8.4791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016224genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-1493144155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  Ave++k+L+
  Cla016224  93 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAVEFVKELE 144
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-1691160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-1191148No hitNo description
Gene3DG3DSA:4.10.280.108.5E-1491147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.20592143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSLDALSSND LFNFIIYDTI SATPNTEHAL RDSSENTFLS VDKCSKPYSR KRRPSEGDSN  60
RATPSSTTTT QQGKKKRKRK AKVCKNKEEA ETQRMTHIAV ERNRRKQMNE HLSVLRSLMP  120
ESYVQRGDQA SIVGGAVEFV KELEHLLSTL EAKKLQILQQ EVDHHQEQEI NEDSRMRMND  180
NNSNKLFSFA SLLMHNSDQN NYCSQYSTKY TSKSKASSAD IEVTLIETHA NLRILSTRSH  240
RQLLKLIAGL QALRLTILHL NLTDFHPLVL YSISLKVEEG CQLRSVDDIA AAAHHMVRII  300
EEEAVLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379KKKRKRK
27479KKRKRK
393104RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465984.11e-180PREDICTED: transcription factor bHLH71
SwissprotQ9SK914e-68BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A1S3CRM41e-179A0A1S3CRM4_CUCME; transcription factor bHLH71
STRINGXP_008465984.11e-180(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.19e-63bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]