PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016013
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 292aa    MW: 32406.5 Da    PI: 7.1246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016013genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-1272115855
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 Er RR+++++ f +L  llP++     +K +K++i+ +Av+YIk Lq
  Cla016013  72 TERERRKKMRNMFTNLHALLPHL----PPKADKSSIVDEAVNYIKVLQ 115
                6*********************6....39****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.2E-1564125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.68764114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.99E-1469119No hitNo description
Gene3DG3DSA:4.10.280.103.2E-1469129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-972120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-1072115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.45E-4206259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSSHHHHHHY PPWTLLNSGS DIDDDNDIKS PINNNTHLLP PPSMQVGKKR EATEGKSSGA  60
TESSDHDIHI WTERERRKKM RNMFTNLHAL LPHLPPKADK SSIVDEAVNY IKVLQETLQK  120
LHKQKLEKLN NNNNNPSLSC SKIVHHPLPT TREAFLADQA SSNNDMSSST ALLPHLSTTV  180
TADNVISILP PPPPPSAFQT WTSSNLVLSV CGHHAHFCIC SVKKPGLFAA LCYVLDKHRI  240
DVVSAHVSSD FHRSFFMIQA HANGGYDEFG AATVAEDTFK EAAGEIIFWL SS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-133LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-133LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137111.21e-154PREDICTED: transcription factor bHLH95
TrEMBLA0A0A0K4R51e-157A0A0A0K4R5_CUCSA; Uncharacterized protein
STRINGXP_004137111.11e-158(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-39bHLH family protein