PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016005

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Protein Properties

Length: 320aa MW: 36468.7 Da PI: 9.4853

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016005	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8.2e-17	125	214	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f+++h e+ +ltl de+ ++++ k+ +k++ l++GW++F +++L +gD +vF+l++ +ef +v ++r Cla016005 125 FVKPMLQSHVTGGFWLGLPVHFCKTHlP---LEDEMLTLVDEDDNEFQTKYLADKTG----LSGGWRGFSIDHQLVDGDALVFQLTKPTEF--KVYIIR 214 89**********************53...34558***********666666....*********************9876666..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.2E-21	116	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-24	118	215	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.25E-27	123	214	No hit	No description
SMART	SM01019	8.6E-20	125	216	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.5E-15	125	215	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.843	125	216	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVESNLTYEE CRLEENKKRM EELNLNKLAD ALKFSSPKSS PTKQLKRPRQ PLDKSSFSVR 60 RSSRFADKPP PNYKEVPIEP LPGIRRTYQR RDLLNRIYAS QEERQYAIDR ARDLQSSLES 120 RYPSFVKPML QSHVTGGFWL GLPVHFCKTH LPLEDEMLTL VDEDDNEFQT KYLADKTGLS 180 GGWRGFSIDH QLVDGDALVF QLTKPTEFKV YIIRAYNLED REDTNEDSDV TQLEKSSKRN 240 TKSSGHKSRA NNSEDKGDNG EDSADVSQLE KSGKKTTKSS GRKSRANKSK DKADNGADLD 300 VPELEKSGKR ITRSSSKGQK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	4e-70	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	4e-70	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008454939.1	1e-179	PREDICTED: B3 domain-containing protein At3g19184-like isoform X1
Swissprot	Q1G3M3	8e-86	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1S3BZ91	1e-177	A0A1S3BZ91_CUCME; B3 domain-containing protein At3g19184-like isoform X1
STRING	XP_008454939.1	1e-178	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-83	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]