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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla015917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9363.51 Da PI: 8.9665 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 10 | 54 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT+ + + +a + + + +W +a+ +g g+t++++k ++ Cla015917 10 GTWTAKQNKAFEKALAVYDQDtpdRWLNVAKAVG-GKTAEEVKRHY 54 79*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.503 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-5 | 10 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-6 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.26E-7 | 11 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MASMSSHGSG TWTAKQNKAF EKALAVYDQD TPDRWLNVAK AVGGKTAEEV KRHYALLVED 60 VKFIESGQVP FPYRTSGGGS QGNVIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-36 | 5 | 79 | 3 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-101 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-101 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151125.2 | 1e-53 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 7e-36 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A0A0K348 | 3e-52 | A0A0A0K348_CUCSA; Uncharacterized protein | ||||
STRING | XP_008447024.1 | 6e-53 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-38 | RAD-like 1 |
Publications ? help Back to Top | |||
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