PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015915
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 90aa    MW: 10534.9 Da    PI: 9.5756
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015915genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66.1e-081460347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +l+ +a +++ ++   +W  Ia  +g  +++ ++k ++  +
        Cla015915 14 TWTAKQNKLFEKALALYDKEtpeRWQNIAMAVG-EKSADEVKRHYEVL 60
                     7******************9*************.9**********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.307761IPR017877Myb-like domain
SMARTSM007176.6E-71163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-51367IPR009057Homeodomain-like
CDDcd001673.26E-51461No hitNo description
PfamPF002498.7E-61460IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-111568IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSLKQQR PETTWTAKQN KLFEKALALY DKETPERWQN IAMAVGEKSA DEVKRHYEVL  60
LEDLRRIESG RVPIPNYRGG GNRDEELRFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2915901188RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023554816.14e-54protein RADIALIS-like 3
SwissprotQ1A1732e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S3BHB07e-52A0A1S3BHB0_CUCME; protein RADIALIS-like 3
STRINGXP_008447023.11e-52(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-33RAD-like 6