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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla015894 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | DBB | ||||||||
Protein Properties | Length: 210aa MW: 22989.8 Da PI: 6.9834 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.7 | 1.1e-08 | 3 | 43 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ +++ e++ fC ++ lC+ C l+ H+ H+ Cla015894 3 IRCDVCDQAEASVFCYADEAALCHGCDLHVHRAnklagkHS 43 58*****************************7677777765 PP | |||||||
2 | zf-B_box | 29.6 | 1.4e-09 | 55 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ fC++++ lC++C ++H+ Ht Cla015894 55 SPRCDICQERRALVFCQQDRAILCRECDISIHEAneHT 92 689*****************************667765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.855 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.4E-7 | 3 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.92E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.1E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.31 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-7 | 55 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.05E-8 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MKIRCDVCDQ AEASVFCYAD EAALCHGCDL HVHRANKLAG KHSRFSLLHP IKKDSPRCDI 60 CQERRALVFC QQDRAILCRE CDISIHEANE HTQKHNRFLL TGVKLSSTCY SHQTSSSSNG 120 CDAAMDVKTG SSNACSKRPK MAANEISSSH SAEKATPSTS NYKVEDGQAL SDGGSFSTSS 180 ISEYLETLPG WCVEEFLDPS AAANRFCKVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681798 | 1e-105 | LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019. | |||
GenBank | LN713255 | 1e-105 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022135715.1 | 1e-130 | B-box zinc finger protein 20 isoform X1 | ||||
Swissprot | Q0IGM7 | 9e-64 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 6e-63 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S3BI96 | 1e-129 | A0A1S3BI96_CUCME; B-box zinc finger protein 20-like isoform X1 | ||||
STRING | XP_008448064.1 | 1e-129 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 3e-62 | DBB family protein |