PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015711
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 512aa    MW: 57195.7 Da    PI: 6.2167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015711genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-08454509147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ W+ eE++ l+++v+++ +       W++I +       ++Rt+ ++k++w+++
        Cla015711 454 RMLWSVEEEDMLKEGVQKFSSTanknlPWRKILEFGRhvfdNTRTPVDLKDKWRNL 509
                      567******************************99889****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.8E-850115IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.4E-762120IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002499.7E-567112IPR001965Zinc finger, PHD-type
PROSITE patternPS01359068111IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.271449510IPR017877Myb-like domain
SuperFamilySSF466899.72E-10452509IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-9453509IPR009057Homeodomain-like
SMARTSM007174.0E-6453512IPR001005SANT/Myb domain
PfamPF002491.4E-6454509IPR001005SANT/Myb domain
CDDcd116603.36E-13457509No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MRINNRRGGR SKPKPSPRSA ASTPSPMASP PLPDQDVPYA EDNTVHEASS KEANDMLDKI  60
DCFQKDTCTR CDQSGDLLVC TEIGCPIALH ELCMSCEPSF DEDGRFYCPY CSYKRALLRV  120
NELRRKTMVA KRALSDFIDT GMVGGGNSPQ MGEAGKKKAD DVSTCGVDVD QPNHGSHLGK  180
ESLQDQDTQV EQNQSNEGEE CVRTEGDLQP TSMLGLNSEN HDGPIVSNVG NNSHSTPVVQ  240
PCEDSMNEET CEGDTSGTHQ VGSLEDKEDG KMMDKENLRS DDIQDDEIAK DQGQLETPGA  300
HHDEEATARE PQDKDDGGEQ IQPDNERMLD DIILTSGNND LKSETTVKKR RFKTKANRRT  360
DLQNVSSPRK SLRLRTPDLG KKSPHIQTPD LGKKSPRIRT PEPRKKSPDI QTPKPGKDHA  420
IKIEKVSVSR NLKLQPASPN QFKKLDFHGG KRKRMLWSVE EEDMLKEGVQ KFSSTANKNL  480
PWRKILEFGR HVFDNTRTPV DLKDKWRNLQ AK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352KKRRFK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462016.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
TrEMBLA0A1S3CHE70.0A0A1S3CHE7_CUCME; protein CHROMATIN REMODELING 4-like isoform X1
STRINGXP_008462016.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022