 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cla015637 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
Family |
C2H2 |
Protein Properties |
Length: 438aa MW: 48635.8 Da PI: 8.9642 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla015637 | genome | ICuGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.8 | 3.8e-05 | 64 | 84 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
Cla015637 64 CEICGKGFQRDQNLQLHRRGH 84
*******************88 PP
|
2 | zf-C2H2 | 13 | 0.00032 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
Cla015637 140 WKCEKCSKKYAVQSDWKAHSKTC 162
58*****************9998 PP
|
3 | zf-C2H2 | 12.2 | 0.00055 | 170 | 188 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr++++++H +
Cla015637 170 DCGTPFSRRDSYVTHRAYC 188
8**************8765 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 438 aa
Download sequence Send
to blast |
MSEEQAISNA FICSIPSLGS INNPSVVKKK RNLPGNPGKK TLYPEAEVVS LSPKTLMATN 60 RFLCEICGKG FQRDQNLQLH RRGHNLPWKL KQRSNGNKEP RKRVYVCPEK SCVHHHPSRA 120 LGDLTGIKKH FCRKHGEKKW KCEKCSKKYA VQSDWKAHSK TCGTKEYKCD CGTPFSRRDS 180 YVTHRAYCVA LAEETARLNA ASTMANNSNN SMADSYNNYH FLKPTNNNNP PQFFPSSNFF 240 KPDETSHMFL NNINNVTPTI GLPFWMATNS HQINFPHSLL PQQTTTTTTT NSDVLSVPSL 300 YSNEEQQSSH QFMASSANMS ATVLLQKAAQ IGVTTSTTDP SLMESFGLKF STITDGKALF 360 SGLYGSIMNS NSNIIPSCCS LENGGDHHQD SEIYSAPAKR MRHTVSEESV TGGEGETRDF 420 LGVGMHSICH PSPVNGWI
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |